| № | City | Airport | IATA code | ICAO code |
| 1 | Alexandroupolis | Alexandroupolis Dimokritos | AXD | LGAL |
| 2 | Astypalaia Island | Astypalaia Island | JTY | LGPL |
| 3 | Athens | Athens International | ATH | LGAV |
| 4 | Chania | Chania Ioannis Daskalogiannis | CHQ | LGSA |
| 5 | Chios | Chios Omiros | JKH | LGHI |
| 6 | Heraklion | Heraklion Nikos Kazantzakis | HER | LGIR |
| 7 | Ikaria Island | Ikaria Island | JIK | LGIK |
| 8 | Ioannina | Ioannina King Pyrros | IOA | LGIO |
| 9 | Kalamata | Kalamata International | KLX | LGKL |
| 10 | Kalymnos Island | Kalymnos Island | JKL | LGKY |
| 11 | Karpathos | Karpathos | AOK | LGKP |
| 12 | Kasos Island | Kasos Island | KSJ | LGKS |
| 13 | Kastoria | Kastoria Aristotelis | KSO | LGKA |
| 14 | Kavala | Kavala Megas Alexandros | KVA | LGKV |
| 15 | Kefallinia | Kefallinia | EFL | LGKF |
| 16 | Kerkyra | Kerkyra Corfu International | CFU | LGKR |
| 17 | Kos | Kos Ippokratis | KGS | LGKO |
| 18 | Kozani | Kozani Filippos | KZI | LGKZ |
| 19 | Kythira | Kythira | KIT | LGKC |
| 20 | Leros | Leros | LRS | LGLE |
| 21 | Limnos | Limnos | LXS | LGLM |
| 22 | Megisti | Megisti | KZS | LGKJ |
| 23 | Milos | Milos | MLO | LGML |
| 24 | Mykonos | Mykonos | JMK | LGMK |
| 25 | Mytilini | Mytilini Odysseas Elytis | MJT | LGMT |
| 26 | Naxos | Naxos | JNX | LGNX |
| 27 | Paros | New Paros Kampos | PAS | LGPA |
| 28 | Paros | Old Paros National | ||
| 29 | Patrai | Patrai Araxos | GPA | LGRX |
| 30 | Preveza/Lefkada | Preveza/Lefkada Aktion | PVK | LGPZ |
| 31 | Rhodes | Rhodes Diagoras | RHO | LGRP |
| 32 | Samos | Samos Aristarchos of Samos | SMI | LGSM |
| 33 | Siteia | Siteia | JSH | LGST |
| 34 | Skiathos | Skiathos Alexandros Papadiamantis | JSI | LGSK |
| 35 | Skyros | Skyros | SKU | LGSY |
| 36 | Syros Island | Syros Island Dimitrios Vikelas | JSY | LGSO |
| 37 | Thessaloniki | Thessaloniki Makedonia | SKG | LGTS |
| 38 | Thira | Thira Santorini | JTR | LGSR |
| 39 | Volos | Volos Nea Anchialos | VOL | LGBL |
| 40 | Zakinthos Island | Zakinthos Island Dionisios Salomos | ZTH | LGZA |