| Country | Bolivia |
|---|
The airline’s main hub is Jorge Wilstermann International Airport. EcoJet headquarters are located in Cochabamba, Bolivia.
| № | City | Country | Airport | IATA code | ICAO code |
| 1 | Cobija | Bolivia | Cobija Captain Anibal Arab | CIJ | SLCO |
| 2 | Cochabamba | Bolivia | Cochabamba Jorge Wilstermann | CBB | SLCB |
| 3 | Guayaramerin | Bolivia | Guayaramerin | GYA | SLGM |
| 4 | La Paz | Bolivia | La Paz El Alto | LPB | SLLP |
| 5 | Riberalta | Bolivia | Riberalta | RIB | SLRI |
| 6 | Santa Cruz | Bolivia | Santa Cruz Viru Viru International | VVI | SLVR |
| 7 | Tarija | Bolivia | Tarija | TJA | SLTJ |
| 8 | Trinidad | Bolivia | Trinidad Jorge Henrich Arauz | TDD | SLTR |