| № | City | Airport | IATA code | ICAO code |
| 1 | Chiayi | Chiayi | CYI | RCKU |
| 2 | Hengchun | Hengchun | HCN | RCKW |
| 3 | Hualien | Hualien | HUN | RCYU |
| 4 | Kaohsiung | Kaohsiung International | KHH | RCKH |
| 5 | Kinmen | Kinmen Shang-Yi | KNH | RCBS |
| 6 | Orchid Island | Lanyu | KYD | RCLY |
| 7 | Green Island | Lyudao | GNI | RCGI |
| 8 | Makung | Makung | MZG | RCQC |
| 9 | Beigan Island | Matsu Beigan | MFK | RCMT |
| 10 | Nangan | Matsu Nangan | LZN | RCFG |
| 11 | Pingtung | Pingtung | PIF | RCSQ |
| 12 | Qimei | Qimei | CMJ | RCCM |
| 13 | Taichung | Taichung Ching Chuan Kang | RMQ | RCMQ |
| 14 | Tainan | Tainan | TNN | RCNN |
| 15 | Taipei | Taipei Songshan | TSA | RCSS |
| 16 | Taitung | Taitung | TTT | RCFN |
| 17 | Taipei | Taiwan Taoyuan International | TPE | RCTP |
| 18 | Wang-an | Wang-an | WOT | RCWA |