| № | City | Airport | IATA code | ICAO code |
| 1 | Bacolod | BacolodSilay International | BCD | RPVB |
| 2 | Baguio City | Baguio Loakan | BAG | RPUB |
| 3 | Basco | Basco | BSO | RPUO |
| 4 | Borongan City | Borongan City | ||
| 5 | Busuanga | Busuanga | USU | RPVV |
| 6 | Butuan | Butuan | BXU | RPME |
| 7 | Calbayog | Calbayog | CYP | RPVC |
| 8 | Catarman | Catarman National | CRM | RPVF |
| 9 | Caticlan | Caticlan Godofredo P Ramos | MPH | RPVE |
| 10 | Cauayan | Cauayan | CYZ | RPUY |
| 11 | Luzon Island | Clark International | CRK | RPLC |
| 12 | Cotabato | Cotabato Awang | CBO | RPMC |
| 13 | Cuyo | Cuyo | CYU | RPLO |
| 14 | Davao | Davao Francisco Bangoy International | DVO | RPMD |
| 15 | Del Carmen | Del Carmen Sayak | IAO | RPNS |
| 16 | Dipolog | Dipolog | DPL | RPMG |
| 17 | Baler | Dr Juan C Angara | BQA | RPUR |
| 18 | Dumaguete | Dumaguete | DGT | RPVD |
| 19 | El Nido | El Nido | ENI | |
| 20 | General Santos | General Santos International | GES | RPMR |
| 21 | Iloilo | Iloilo Mandurriao | ILO | RPVI |
| 22 | Jolo | Jolo | JOL | RPMJ |
| 23 | Kalibo | Kalibo | KLO | RPVK |
| 24 | Laguindingan | Laguindingan International | CGY | RP02 |
| 25 | Laoag | Laoag | LAO | RPLI |
| 26 | Legazpi | Legazpi | LGP | RPLP |
| 27 | Lingayen | Lingayen | RPUG | RPUG |
| 28 | Lubang | Lubang | LBX | RPLU |
| 29 | Lwbak | Lwbak | LWA | |
| 30 | Maasin | Maasin Panan-awan | RPSM | |
| 31 | Cebu | Mactan-Cebu International | CEB | RPVM |
| 32 | Camiguin | Mambajao | CGM | RPMH |
| 33 | Mamburao | Mamburao | MBO | RPUM |
| 34 | Manila | Manila Ninoy Aquino International | MNL | RPLL |
| 35 | Manila | Manila-Sangley Point Danilo Atienza Air Base | SGL | RPLS |
| 36 | Marinduque | Marinduque | MRQ | RPUW |
| 37 | Masbate | Masbate | MBT | RPVJ |
| 38 | Naga | Naga | WNP | RPUN |
| 39 | Lal-Lo | Northern Cagayan Lallo International | ||
| 40 | Ormoc | Ormoc | OMC | RPVO |
| 41 | Ozamiz City | Ozamiz City Labo | OZC | RPMO |
| 42 | Pagadian | Pagadian | PAG | RPMP |
| 43 | Palanan | Palanan Isabella | RPLN | |
| 44 | Puerto Princesa | Puerto Princesa | PPS | RPVP |
| 45 | Roxas City | Roxas City | RXS | RPVR |
| 46 | San Fernando | San Fernando Airport (Philippines) | SFE | RPUS |
| 47 | San Jose | San Jose Mindoro | SJI | RPUH |
| 48 | San Vicente | San Vicente | ||
| 49 | Sicogon Island | Sicogon Island | ICO | |
| 50 | Subic Bay | Subic Bay International | SFS | RPLB |