| № | City | Airport | IATA code | ICAO code |
| 1 | Blantyre | Blantyre Chileka | BLZ | FWCL |
| 2 | Chelinda | Chelinda | CEH | FWCD |
| 3 | Club Makokola | Club Makokola | CMK | FWCM |
| 4 | Karonga | Karonga | KGJ | FWKA |
| 5 | Likoma Island | Likoma | LIX | FWLK |
| 6 | Lilongwe | Lilongwe International | LLW | FWKI |
| 7 | Monkey Bay | Monkey Bay | MYZ | FWMY |
| 8 | Liwonde | Mvuu Camp | VUU | |
| 9 | Mzuzu | Mzuzu | ZZU | FWUU |