| № | City | Airport | IATA code | ICAO code |
| 1 | Batken | Batken | UAFB | |
| 2 | Batken | UAFB | ||
| 3 | Bishkek | Bishkek Manas International | FRU | UCFM |
| 4 | Isfana | Isfana | UAFI | |
| 5 | Jalal-Abad | Jalal-Abad | UAFJ | |
| 6 | Karakol | Karakol International | UCFP | |
| 7 | Karakol International | UCFP | ||
| 8 | Kazarman | Kazarman | ||
| 9 | Kerben | Kerben | UAFE | |
| 10 | Naryn | Naryn | UAFN | |
| 11 | Osh | Osh | OSS | UCFO |
| 12 | Talas | Talas | ||
| 13 | Tamchy | Tamchy Issyk-Kul International | IKU | UCFL |