| 1 | Aguni | Aguni | AGJ | RORA |
| 2 | Akita | Akita | AXT | RJSK |
| 3 | Amakusa | Amakusa Airfield | AXJ | RJDA |
| 4 | Amami O Shima | Amami O Shima | ASJ | RJKA |
| 5 | Aomori | Aomori | AOJ | RJSA |
| 6 | Asahikawa | Asahikawa | AKJ | RJEC |
| 7 | Chichijima | Chichijima | | |
| 8 | Chofu | Chofu | RJTF | RJTF |
| 9 | Fukue | Fukue | FUJ | RJFE |
| 10 | Fukuoka | Fukuoka | FUK | RJFF |
| 11 | Fukushima | Fukushima | FKS | RJSF |
| 12 | Hachijo Jima | Hachijo Jima | HAC | RJTH |
| 13 | Hakodate | Hakodate | HKD | RJCH |
| 14 | Hanamaki | Hanamaki | HNA | RJSI |
| 15 | Hiroshima | Hiroshima International | HIJ | RJOA |
| 16 | Ibaraki | Ibaraki | IBR | RJAH |
| 17 | Iki | Iki | IKI | RJDB |
| 18 | Iwakuni | Iwakuni | IWK | RJOI |
| 19 | Iwami | Iwami | IWJ | RJOW |
| 20 | Iwoto (Iwo Jima) | Iwoto (Iwo Jima) | IWO | |
| 21 | Izumo | Izumo | IZO | RJOC |
| 22 | Kagoshima | Kagoshima | KOJ | RJFK |
| 23 | Kikaiga Shima | Kikaiga Shima | KKX | RJKI |
| 24 | Kitadaito | Kitadaito | KTD | RORK |
| 25 | Kitakyushu | Kitakyushu | KKJ | RJFR |
| 26 | Kochi | Kochi Airport (Japan) | KCZ | RJOK |
| 27 | Komatsu | Komatsu | KMQ | RJNK |
| 28 | Kumamoto | Kumamoto | KMJ | RJFT |
| 29 | Kume-jima | Kume-jima | UEO | ROKJ |
| 30 | Kushiro | Kushiro | KUH | RJCK |
| 31 | Matsumoto | Matsumoto | MMJ | RJAF |
| 32 | Matsuyama | Matsuyama | MYJ | RJOM |
| 33 | Memanbetsu | Memanbetsu | MMB | RJCM |
| 34 | Minami Daito | Minami Daito Maridor | MMD | ROMD |
| 35 | Misawa | Misawa | MSJ | RJSM |
| 36 | Miyake Jima | Miyake Jima | MYE | RJTQ |
| 37 | Miyako | Miyako Hirara | MMY | ROMY |
| 38 | Miyazaki | Miyazaki | KMI | RJFM |
| 39 | Monbetsu | Monbetsu | MBE | RJEB |
| 40 | Nagasaki | Nagasaki | NGS | RJFU |
| 41 | Nagoya | Nagoya Chubu Centrair International | NGO | RJGG |
| 42 | Nagoya | Nagoya Komaki | NKM | RJNA |
| 43 | Nakashibetsu | Nakashibetsu | SHB | RJCN |
| 44 | Ishigaki | New Ishigaki | ISG | ROIG |
| 45 | Niigata | Niigata | KIJ | RJSN |
| 46 | Obihiro | Obihiro | OBO | RJCB |
| 47 | Odate Noshiro | Odate Noshiro | ONJ | RJSR |
| 48 | Oita | Oita | OIT | RJFO |
| 49 | Okayama | Okayama | OKJ | RJOB |
| 50 | Oki Island | Oki Island | OKI | RJNO |