| № | City | Airport | IATA code | ICAO code |
| 1 | Brus Laguna | Brus Laguna | BHG | MHBL |
| 2 | Choluteca | Choluteca | MHCH | MHCH |
| 3 | Copan | Copan Ruinas | RUY | MHRU |
| 4 | EL Aguacate | El Aguacate | ||
| 5 | Gracias | Gracias Lempira Celaque | GAC | MGHS |
| 6 | Guanaja | Guanaja | GJA | MHNJ |
| 7 | La Ceiba | La Ceiba Goloson International | LCE | MHLC |
| 8 | Puerto Lempira | Puerto Lempira | PEU | MHPL |
| 9 | Roatan | Roatan Juan Manuel Galvez International | RTB | MHRO |
| 10 | San Pedro Sula | San Pedro Sula Ramon Villeda Morales Airport (Honduras) | SAP | MHLM |
| 11 | Tegucigalpa | Tegucigalpa Toncontin International | TGU | MHTG |
| 12 | Tela | Tela | TEA | MHTE |
| 13 | Trujillo | Trujillo Capiro | TJI | MHTJ |
| 14 | Utila | Utila | UII | MHUT |