| № | City | Airport | IATA code | ICAO code |
| 1 | Coatepeque | Coatepeque | CTF | MGCT |
| 2 | Flores | Flores Mundo Maya International | FRS | MGMM |
| 3 | Guatemala City | Guatemala City La Aurora | GUA | MGGT |
| 4 | Puerto Barrios | Puerto Barrios | PBR | MGPB |
| 5 | Port of San Jose | Puerto San Jose | GSJ | MGSJ |
| 6 | Retalhuleu | Retalhuleu | RER | MGRT |