| № | City | Airport | IATA code | ICAO code |
| 1 | Loja | Ciudad de Catamayo | LOH | SECA |
| 2 | Cuenca | Cuenca Mariscal Lamar | CUE | SECU |
| 3 | Esmeraldas | Esmeraldas General Rivadeneira | ESM | SETN |
| 4 | Puerto Francisco de Orellana | Francisco de Orellana | OCC | SECO |
| 5 | Galapagos Islands | Galapagos Islands Seymour | GPS | SEGS |
| 6 | Guayaquil | Guayaquil Jose Joaquin de Olmedo | GYE | SEGU |
| 7 | Tena | Jumandy | TNW | SEJD |
| 8 | Lago Agrio | Lago Agrio | LGQ | SENL |
| 9 | Latacunga | Latacunga Cotopaxi International | LTX | SELT |
| 10 | Macas | Macas Edmundo Carvajal | XMS | SEMC |
| 11 | Manta | Manta | MEC | SEMT |
| 12 | Portoviejo | Portoviejo | PVO | SEPV |
| 13 | Quito | Quito Mariscal Sucre International | UIO | SEQM |
| 14 | Salinas | Salinas General Ulpiano Paez | SNC | SESA |
| 15 | San Cristobal | San Cristobal | SCY | SEST |
| 16 | Santa Rosa | Santa Rosa Regional | ETR | SERO |
| 17 | Shell Mera | Shell Mera Rio Amazonas | PTZ | SESM |
| 18 | Taisha | Taisha | TSC | SETH |
| 19 | Tarapoa | Tarapoa | TPC | SETR |
| 20 | Tulcan | Tulcan | TUA | SETU |